Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-02 Thread Sonali Amonkar
Hi Nate, The last option you gave worked like a charm! Thank you for your assistance! Warm regards, Sonali Amonkar -Original Message- From: Nate Coraor [mailto:n...@bx.psu.edu] Sent: Thursday, January 27, 2011 7:21 PM To: Sonali Amonkar Cc: Galaxy Dev Subject: Re: Error with setuptools

Re: [galaxy-dev] unable to log out of galaxy

2011-02-02 Thread Nate Coraor
Nicki Gray wrote: Hello When trying to logout from our local instance of Galaxy I get the error message This link may not be followed from within Galaxy. and cant log out. I see this using Firefox, Chrome and Camino How do I fix this so I can log out? Hi Nicki, Are you using

[galaxy-dev] Galaxy integration with LSF: seg fault

2011-02-02 Thread Marina Gourtovaia
Hello I've set up Galaxy to use LSF. My first job has failed because Galaxy submitted it to the default queue, which was wrong in my case. However, Galaxy gracefully survived the failure, I was able to get the job number from the console output and figure out what went wrong. Next time I

Re: [galaxy-dev] Version Error and Python 2.7

2011-02-02 Thread John David Osborne
Thanks Peter! I found 2.6 ( http://www.python.org/download/releases/2.6.6/) so I will go ahead and try that with galaxy and see if the problem goes away. -John On 2/2/11 12:07 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Wed, Feb 2, 2011 at 6:02 PM, John David Osborne ozb...@uab.edu

[galaxy-dev] Installing reference genomes

2011-02-02 Thread Geoff Jentry
Hello ... I've installed a Galaxy server on one of our local machines (X86_64 linux running CentOS 5). When I go to modules that have a Select a reference genome: option, the dropboxes are empty. I did find this thread: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-August/003138.html