Hi Nate,
Thanks for ur reply. I have made a job runner which will submit job to job
meta-scheduler, which can handle 200 jobs concurrently. So is it safe to set
local_job_queue_workers = 200 ??
This instance of Galaxy will be accessed by some 50 users. So can
threadpool_workers be set to 50??
Hi Nate,
We are still awaiting any replies to the error on the Torque community. About
the debugging, we did try tracejob, however since the job was not getting
submitted itself, Torque did not have any logging to the job(it wasn't even a
job yet).
Meanwhile, we are retrying deployment of
Lee:
I am CC'ing you e-mail to galaxy-dev list. You can get a lot of useful answers
by posting to this list. Maintaining Galaxy is not different from maintaining
other software resources. To run it locally you will need to have a system
administration supervision as with any other high
Sonali Amonkar wrote:
Hi Nate,
We are still awaiting any replies to the error on the Torque community. About
the debugging, we did try tracejob, however since the job was not getting
submitted itself, Torque did not have any logging to the job(it wasn't even a
job yet).
Meanwhile, we
Jean-Baptiste Denis wrote:
Hello everybody,
i've got one galaxy server running. The ressource on the wiki are very
useful for that purpose, thank you.
I've got one question regarding data library when using upload files
from filesystem paths. There is a checkbox, unchecked by default,
Hi Lee
* What is a realistic amount of someones time to implement Galaxy on a Linux
server so that it can be used by researchers using the Web?
Galaxy is simple to set up and works out-of-the-box. You will have a
functional Galaxy server within minutes (yes, 'within minutes').
Hi Lee,
If setting up Galaxy on an existing supported cluster, I would estimate
the setup time for an experienced sysadmin to be a day or two, although
that number can be larger if a lot of tools that depend on external
binaries (e.g. NGS mappers) and locally cached reference genomes are
desired,
Yeah, also that is is pretty much how CloudMan handles
the infrastructure management now - it has it's own descriptor (i.e.,
template) and from there it handles all the provisioning and coordination of
the underlying resources. Granted, having Amazon do it would add to the
robustness of the
hari krishna wrote:
Hi ,
Can any one help me how to transfer files from head node to remote
location by using DRMAA job template attributes with example will DRMAA
supports staging in and staging out of files,...
Hi,
You can use the drmaa_transfer_files job template attribute,
Peter Cock wrote:
File
/home/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/__init__.py,
line 29
return (content if len(content) = length else content[:length].rsplit('
', 1)[0]+suffix)
^
SyntaxError: invalid syntax
I deduce you're using Python 2.4,
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