Re: [galaxy-dev] cloud instance missing /opt/sge/default/common directory

2011-09-26 Thread Enis Afgan
Are you continuously running this instance and just restarting it or do you start a clean instance each time? I'd suggest ensuring the persistent_data.yaml in your cluster's bucket is correct (see below), terminating this instance, and starting a new one with the same user data as used for this

Re: [galaxy-dev] Galaxy fronting multiple clusters

2011-09-26 Thread Luobin Yang
I have never setup a Galaxy instance fronting multiple clusters, but it's something I would like to explore. I have a dedicated cluster to run Galaxy jobs and I've got another a shared cluster to which I hope Galaxy can assign jobs when the dedicated cluster is too busy. From my understanding of

Re: [galaxy-dev] picard error.

2011-09-26 Thread Ross
A fix for these warnings is in revision 6048 of galaxy-central - again, thanks for pointing them out Michael. For the record, the warnings were from the HSmetrics and GCbias tools and arose because there is a user configurable maxheap parameter that is not available by default - it is commented