Hi Jen,
Thanks for the quick response. The workaround you describe could work,
but I might run into trouble later on.
My interest is to develop a workflow for GATK, which have very strict
requirements on the input BAM file. One of which is that the sorting
have to be exactly the same as the
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test
Module paste.exceptions.errormiddleware:143 in __call__
http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test app_iter =
self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
Looks like the mv is something I added and forgot about. I changed it to
shutil.copyfile and it works fine. This also has something to do with the
isilon. I pushed it to the actual user repository so you can check it out.
Have a good weekend.
Thanks,
Ilya
-Original Message-
From:
Thanks for your response. I figured out it was some extra text at the end
of the xml file that was preventing galaxy from reading the file.
I also was confused about how to setup the proxy. For Ubuntu, the apache2
configuration file is in /etc/apache2/sites-available/default (using
virtual
