Hello,
I am working with galaxy for a bioinfomatics class at Umass Amherst. I
have tried doing the
http://manuals.bioinformatics.ucr.edu/home/gui-ngs-analysis tutorial. I
am currently on the quality control section trying to use the illumina
human data set and the NGS mapping bowtie for
Hello,
After pulling latest changes (March 2012 - r 40f1816d6857), jobs
launched run properly (output files OK) but I get the following warning:
/WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako)
cannot be fetched/
In addition, Galaxy GUI is not exactly GUI seen in the
It seems like GATK authors at Broad really really want you to phone
home every time you use their software. I'm getting this error while
running the lastest version:
ERROR MESSAGE: Running with the -et NO_ET or -et STDOUT option
requires a GATK Key file. Please see
Hi everyone -
Here at the University of Iowa we are working on deploying Galaxy
locally for campus wide access. I am interested in forming a community
of other institutions trying to deploy Galaxy locally and mange/operate
it on a broad level. Is anyone else? If there is enough interest,
This is a great idea.
On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein
annbl...@eng.uiowa.edu wrote:
Hi everyone -
Here at the University of Iowa we are working on deploying Galaxy locally
for campus wide access. I am interested in forming a community of other
institutions trying to
On Apr 27, 2012, at 6:00 AM, Sarah Maman wrote:
Hello,
After pulling latest changes (March 2012 - r 40f1816d6857), jobs launched run
properly (output files OK) but I get the following warning:
/WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be
fetched/
Hi
I'm interested
On Apr 27, 2012, at 3:14 PM, Ryan Golhar wrote:
This is a great idea.
On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein
annbl...@eng.uiowa.edumailto:annbl...@eng.uiowa.edu wrote:
Hi everyone -
Here at the University of Iowa we are working on deploying Galaxy locally for
Cool idea. I am very interested in it. One question: how could we attend
the conference since we all at different place?
Cheers,
Tyler
On Fri, Apr 27, 2012 at 12:33 PM, Mohammad Heydarian mheyd...@jhmi.eduwrote:
Great idea. In!
Cheers,
Mo Heydarian
PhD candidate
The Johns Hopkins School
JAX would be interested in this.
Dave
From: Ryan Golhar
ngsbioinformat...@gmail.commailto:ngsbioinformat...@gmail.com
Date: Friday, April 27, 2012 3:14 PM
To: Ann Black-Ziegelbein annbl...@eng.uiowa.edumailto:annbl...@eng.uiowa.edu
Cc:
Thanks everyone! Glad to find some common interest. I will see if I can
arrange an initial call.
Hi Tyler - I was hoping we could just do a voice conference call. It
would be great to meet those face to face at the Galaxy Conference in
Chicago if some are attending.
Thanks!
Ann
On
I'm interested too.
On 27 Apr 2012, at 21:13, Ann Black-Ziegelbein wrote:
Thanks everyone! Glad to find some common interest. I will see if I can
arrange an initial call.
Hi Tyler - I was hoping we could just do a voice conference call. It would
be great to meet those face to face at
Here's another interested!
On Apr 27, 2012, at 8:45 PM, Ann Black-Ziegelbein wrote:
Hi everyone -
Here at the University of Iowa we are working on deploying Galaxy
locally for campus wide access. I am interested in forming a community
of other institutions trying to deploy Galaxy locally and
We are interested too. Thanks Ann for taking the initiative.
--
Shantanu
On Apr 27, 2012, at 3:38 PM, Anne Pajon wrote:
I'm interested too.
On 27 Apr 2012, at 21:13, Ann Black-Ziegelbein wrote:
Thanks everyone! Glad to find some common interest. I will see if I can
arrange an
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