[galaxy-dev] datatype directory

2014-09-30 Thread David Hoover
Why isn't there a datatype for a directory of files? This seems like such a simple thing. If an executable generates or expects a directory as its input or output, why must a fancy complicated composite datatype be created to handle this? David Hoover David Hoover, PhD

Re: [galaxy-dev] datatype directory

2014-09-30 Thread Peter Cock
On Tue, Sep 30, 2014 at 4:34 PM, David Hoover hoove...@helix.nih.gov wrote: Why isn't there a datatype for a directory of files? This seems like such a simple thing. If an executable generates or expects a directory as its input or output, why must a fancy complicated composite datatype be

[galaxy-dev] Disk space issue - again

2014-09-30 Thread Patel, Viren
Hello. I have a Galaxy user whose disk usage remains at 91% even after deleting and purging all histories and datasets (The initial disk usage was 99%). I have searched the mailing list (e.g. http://dev.list.galaxyproject.org/disk-space-usage-td4660164.html) and wiki posts and followed all the

[galaxy-dev] 2014 Galaxy Questionnaire

2014-09-30 Thread Dave Clements
Hello all, The Galaxy Project is preparing for our next grant cycle and we are seeking your feedback and comments on on all things Galaxy. We have created two questionnaires, each focused on a different way to interact with Galaxy: 1. *Galaxy User Questionnaire

Re: [galaxy-dev] Disk space issue - again

2014-09-30 Thread Dannon Baker
Hi Viren, There's a script shipped with galaxy that you can use './scripts/set_user_disk_usage.py' to force recalculation of a user's disk usage. -Dannon On Tue, Sep 30, 2014 at 7:44 PM, Patel, Viren viren.pa...@emory.edu wrote: Hello. I have a Galaxy user whose disk usage remains at 91% even

[galaxy-dev] Login with a system user

2014-09-30 Thread Daniel Ruiz Molina
Hello, I have configured Galaxy, but I would be very interested in configure it with PAM or /etc/passwd (/etc/shadow) instead of creating a user in the web interface. How can I configure Galaxy for authenticating with system files? Thanks.