Hi!
This might be helpful:
http://wiki.g2.bx.psu.edu/Admin/Config/Tool%20Dependencies
Cheers,
Sascha
Original Message
processed by CONSOLIDATE
Subject:
[galaxy-dev] How to configure samtools in galaxy on cluster
Sent:
Montag, 6. August 2012 19:39
From:
michael xu
maybe you need to include username, password and host?
database_connection =
mysql://username:password@host/database?unix_socket=/var/run/mysqld/mysqld.sock
Regards, Hans
On 08/07/2012 03:19 AM, Kenneth Auerbach wrote:
Hello,
Galaxy runs fine 'out of the box' with the default
Hi all,
I?m running a local instance of Galaxy and every time I start it, Galaxy tries
to recover some jobs. These jobs are not running anymore and I get the following
information:
galaxy.jobs DEBUG 2012-08-07 10:58:08,056 (418) Working directory for job is:
Hi Sascha,
Can you see these jobs in manage jobs, under the admin menu? Maybe you can
kill them from there.
David
From: s.kast...@gatc-biotech.com
To: galaxy-dev@lists.bx.psu.edu
Date: Tue, 7 Aug 2012 11:08:21 +0200
Subject: [galaxy-dev] Job recovery of non existing job
Hi all,
I’m
Ahhh, of course! Thanks David. I have missed this entry somehow o_O
Cheers
Original Message
processed by CONSOLIDATE
Subject:
RE: [galaxy-dev] Job recovery of non existing job
Sent:
Dienstag, 7. August 2012 11:38
From:
David Roquis (david_roq...@hotmail.com)
Hi Sascha,
Can you see
Trackster:
I have noticed a few bugs with trackster in the latest release (tested on
Chrome and Firefox):
1. Overview button does not work
2. If I add tracks to a group and make a composite track, then showindividual
tracks again I get new menu options (filters, tool, tool parameter
Hello,
Galaxy runs fine 'out of the box' with the default universe_wsgi.ini
initialization file. But when I change the database_connection
statement to connect to my MySql database, I get the errors below. Can
you please tell what the problem is? Thanks!
-Wolf.
Modification to
Hello,
I am extracting data from a database and displaying the result in tabular
format. I would like to have the header in the output as column names, so that
when I do 'join' I know which columns I am referring to. Currently, it only
displays as 1, 2, 3. How do I assign column names to the
Hi,
Now I'm using this database_connection in my universe_wsgi.ini file:
database_connection =
mysql://username:password@localhost/galaxy?unix_socket=/var/run/mysqld/mysqld.sock
and I still get this:
-
linuxmint galaxy-galaxy-dist-ec29ce8e27a1 # sh run.sh
Traceback (most
