On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf
sch...@ibe.med.uni-muenchen.de wrote:
Hi all,
I have a couple of question around the topic hardware requirements for a
server which is intended to be bought and used as concept machine for
NGS-related jobs. It should be used for development
Hello,
I have a local instance, I am the only user, and I would like to use a tool
that is in the galaxy tool shed but not in my local instance.
After reading the toolshed wiki (http://wiki.g2.bx.psu.edu/Tool%20Shed) I have
a few questions.
1. Do I need a local tool shed? I need to use an
Hi Edward,
On Aug 10, 2012, at 8:26 PM, Edward Turk wrote:
Hello,
I have a local instance, I am the only user, and I would like to use a tool
that is in the galaxy tool shed but not in my local instance.
After reading the toolshed wiki (http://wiki.g2.bx.psu.edu/Tool%20Shed) I
have a
Yes, thanks, I should have mentioned that.
I posted in both forum and dev-list, because I don't expect the forum
members and the dev-list subscribers to be a 100% identical...
Sorry for any inconvenience...
Peter Cock wrote:
On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf
Hello,
We are having trouble running FastQC on our production server.
The original stacktrace looked like this;
Fastq failed.
Error executing FastQC. Unknown option: djava.awt.headless
Exception in thread main java.lang.NoClassDefFoundError:
uk/ac/bbsrc/babraham/FastQC/FastQCApplication
Caused
Hey Sebastian-
It may help to consider other pieces aside from compute nodes
that you will need, such as nodes for proxies and databases,
networking gear (such as switches and cables), and so on.
http://usegalaxy.org/production has some details, and there are
high-level pieces explained at
On Mon, Aug 13, 2012 at 9:25 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hi Peter (and others in the Galaxy community using the tool shed),
This issue should now be resolved in the Galaxy tool shed.
Thanks Greg,
Peter
___
Please keep all
I was wondering if this question had been answered.
I'd like to be able to set metadata from within a tool as well.
Kyle
On Tue, Jul 17, 2012 at 10:01 AM, roberto.dila...@uniparthenope.it wrote:
Hi everyone,
How can I set dataset's metadata from within the tool?
For example: From the command
