Hi all! > I'd like to define 'blastxml' to 'tabular' conversion within Galaxy > so that this can be used automatically (e.g. Tools expecting just > tabular data would have converted BLAST XML files listed in the > drop down). The functionality to do this exists in my Python tool > 'blastxml_to_tabular' currently in the 'ncbi_blast_plus' repository, > which might have to move into 'blast_datatypes' for this to work. > http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus > http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes > > I've skimmed over the instructions here, but would like to look > at a couple of real examples to make sure I've understood: > http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-February/013434.html > > Are there any good examples of 3rd party Galaxy datatypes > defining conversion like this?
To add some more question to that topic. How to hide the converter from the tool-panel, when its available within Galaxy? And is it possible to use third-party tool-shed dependencies in data-type definition files? I have a data-type that is really hard to sniff. I would like to use an external library for that purpose. Thanks, Bjoern ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
