To ease the maintenance of our Dutch National galaxy, we're trying to set
up our own toolshed on a system that happens to have a nicely large MySQL
database running. We'd like to make it use that database. The setup has
been ok, until we started running the toolshed on the MySQL server for the
Hi Rob
Yes, this looks like an SQLAlchemy issue, producing an 'create index'
statement which is not compatible with MySQL.
I guess line 146 in
~/lib/galaxy/webapps/community/model/migrate/versions/0001_initial_tables.py
is the culprit:
Column( annotation, TEXT, index=True) )
I
On Thu, Apr 11, 2013 at 6:03 PM, Nate Coraor n...@bx.psu.edu wrote:
On Apr 11, 2013, at 12:39 PM, Peter Cock wrote:
On Thu, Apr 11, 2013 at 5:02 PM, John Chilton chil...@msi.umn.edu wrote:
Hey Peter,
Hopefully Nate will have some wisdom, all I have is a workaround (I
have fought with this
Hi all,
I'd like to be able to experiment with the new automated testing
recently added to the main Tool Shed http://toolshed.g2.bx.psu.edu/
by first trying my updates on the Test Tool Shed (to make sure my
tests will work before making the tool update public).
It appears that the testing
Dear Galaxy team,
I'm trying to install NCBI + tools on a local instance of galaxy (rep:
8.1546099212f), but I get the following error, which I do not get when
trying to install other tools.
Thank you for all your hard work. It's all much appreciated
David
Error Traceback:
View as:
Hi Sarah,
On 4/11/13 8:02 AM, Sarah Maman wrote:
Thnaks Jennifer,
Excuse me, my previous mail contains an error : In fact, the reference
genome from my history was a fasta format (the name was GTF file but
the format was fasta...).
So, when I run tophat with a reference genome from your
