Hey guys,
we found a curios bug, but it is a little bit tricky to explain.
Here is an example:
- Click on Concatenate datasets tail-to-head
- add a new data set
- click on the first data field and select your data set of choice
- press tab to get to the next data set an select the second
Hello,
This should be working now in stable's branch, revision:
9ebd773https://bitbucket.org/galaxy/galaxy-central/commits/9ebd7732e616492f4570587496f1b9074cb2eac7.
You should be able to use the saved histories list *and* log_actions=True
together. Let me know if you see any more trouble.
Thanks
Hi,
I was wondering if Galaxy provides python library for Galaxy tools. For
example, if it did happen, filter and sort tools can be expressed like
this: galaxy.filter(param1, param2, ...) and galaxy.sort(param1, param2,
...) instead of using command line tools like filtering.py $param1,
$param2,
Dear all,
We are doing some processes in our server that use fastq files. We have
obtained the data in .sra format and then convert them into fastq format
using the sra tool kit. However, when we upload this files into galaxy,
some tools does not recognize the file as fastq. When we apply
Thanks Carl,
Happy you got to the bottom of it.
Shane
On 19/07/2013, at 2:28 AM, Carl Eberhard carlfeberh...@gmail.com wrote:
Hello,
This should be working now in stable's branch, revision: 9ebd773. You should
be able to use the saved histories list and log_actions=True together. Let me
Try the fastqsanger datatype if it works fine if not try the others such as
fastqillumina etc
Thanks
Ambrose
-Original Message-
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Ricardo Perez
Sent: 18 July 2013 20:41
To:
What you envision probably isn't possible yet.
Two ideas for extending Galaxy:
(1) use the show structure functionality from the history menu to generate a
summary page
or
(2) create a Pages API and implement a function to create and save a new page
that describes the structure.
Best,
J.
Hi everyone,
I'm running into a bit of trouble with running functional tests on tool
wrappers for rseqc that I am writing (testing according to the wiki
pagehttp://wiki.galaxyproject.org/TestingInstalledTools).
The tools are listed in shed_tool_conf.xml. Though I'm working with ~15
tool wrappers,
Thanks Brad! But her group's role is not even showing up when I edit
permissions on the files. More frustrating is that her role and her
group-role shows up when I try to edit the folder's permissions, but I
can't see how to leverage that information.
Also, I found that I cannot purge the
Showing the structure seems to be ok. Thanks!
On Thu, Jul 18, 2013 at 12:08 PM, Jeremy Goecks jeremy.goe...@emory.eduwrote:
What you envision probably isn't possible yet.
Two ideas for extending Galaxy:
(1) use the show structure functionality from the history menu to
generate a summary
Hi, I buried this into another email but I would like to get some help on
it and therefore have to make it visible.
Newer users to my Galaxy instance are not showing up under permissions when
I try to give them access to MiSeq data. Is there any kind of
troubleshooting steps I can take to
Ah. Forgive me for not paying attention to that requirement. Tools usually
run as the Galaxy user so only local admins can do that at present because
allowing a non-admin user to install a newly generated tool, especially on
a public site opens up some interesting security challenges. I think it
Hi Nilesh,
A test_data folder and contents seem to be missing from your (eg) dev
repository - the docs at http://wiki.galaxyproject.org/Tool%20Shed include
http://wiki.galaxyproject.org/TestingInstalledTools which starts with:
Tool shed repositories that contain tools with defined functional
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