Fastq datasets can have many different encodings for quality scores. See here
for details:
http://en.wikipedia.org/wiki/FASTQ_format
Many tools in Galaxy require that fastq datasets be in fastqsanger format and
designated as such in its datatype. Because your data appears to be in
Lee;
I think all these issues are due to using roles over groups. You'll get
confusing behavior like this if you have roles assigned to top level
folders in the data libraries. It tries to avoid letting you set
conflicting roles on the underlying files so will have less options in
permissions
Hello everyone,
I had configured galaxy with MySQL database and for some time it was
working fine. But suddenly it started showing following warning whenever I
start galaxy.
.../galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs2.egg/sqlalchemy/sql/expression.py:1927:
SAWarning: The
Hi Ross,
Thanks so much for your help. Actually, I initially all my tools in the
test-data directory as the wiki described, and thought that running
functional tests on tools installed from the tool shed would automatically
look for appropriate files in this directory.
However, after looking a
