Hi Shantanu,
updates are a little bit special. They refer to a changeset of the
tool that is not invasive. For example if the tool number did not
change. If the change in will affect reproducibility it will get a new
installable revision number. That new revision is only installable
with a new
Hi Greg,
I tried to extend my old list [1] but I'm not allowed to edit it. Maybe
you can add the following items to it.
This time I collected a few items that are relevant for the Galaxy site
of the Tool Shed ( When the user is installing via webinterface )
- offer an upgrade option, I think
Hi Bjoern and Ross,
thanks for your replies, we'll try to downgrade the gplot version, but we have
to wait until our server admin is back from his vacation. This should be at the
beginning of the next week.
Best wishes,
Thomas
Von: Ross [mailto:ross.laza...@gmail.com]
Gesendet: Dienstag, 27.
Peter,
I also tried running the command that returns error code 64 on the same
system that runs the automated tests, and it downloaded the correct file
for that operating system and architecture. So I'm not sure why it's
failing when run through buildbot, but I'll look into it and get back to
Hello Bjoern,
I've updated the Trello card with your requests - thanks!
Greg Von Kuster
On Aug 27, 2013, at 3:37 AM, Bjoern Gruening bjoern.gruen...@gmail.com wrote:
Hi Greg,
I tried to extend my old list [1] but I'm not allowed to edit it. Maybe
you can add the following items to it.
Thomas,
Did you generate the work flow from scratch or did you make a simple analysis
in the history and extracted a work flow from that? The latter we usually do
without problems whatever...but we don't use the mothur tools though...
Alex
Van: galaxy-dev-boun...@lists.bx.psu.edu
I can't seem to find any information on the Galaxy wiki website about the
procedure for updating a local Galaxy instance to the newest release. Is
there a tutorial for this somewhere?
Thank you,
Richard
___
Please keep all replies on the
Please follow the session Keep your code up to date at
http://wiki.galaxyproject.org/Admin/Get%20Galaxy
--/Vipin
On Tue, Aug 27, 2013 at 10:58 AM, Richard Kuo izen...@gmail.com wrote:
I can't seem to find any information on the Galaxy wiki website about the
procedure for updating a local
Thank you Vipin. Is there an easy way to see if changes have been made to
the database structure between the release you currently have and the
newest release? Presumably you would either have to read the news brief for
each release between yours and the current one or just pull the change and
see
As you discovered, this isn't possible yet. You'll need to break up your
parameters into multiple conditions, so Yes/No for Blast and Yes/No for Fasta.
Best,
J.
On Aug 26, 2013, at 6:33 AM, Kahlke Tim wrote:
Hei,
Is it possible to use a select multiple=True for a conditional? I'm
trying
There are sporadic reports of this issue, but I haven't been able to
reproduce it. My best guess is that it's due to trying to use the custom
build before Galaxy has finished creating it. To ensure that the custom
build is ready for use, make sure to wait for Galaxy to show the number of
On Aug 26, 2013, at 11:59 AM, James Taylor wrote:
On Mon, Aug 26, 2013 at 11:48 AM, John Chilton chil...@msi.umn.edu wrote:
I think it is interesting that there was push back on providing
infrastructure (tool actions) for obtaining CBL from github and
performing installs based on it because
On 22.08.2013, at 19:50, Jeremy Goecks wrote:
Internal Server Error
Galaxy was unable to sucessfully complete your request
URL: http://127.0.0.1:8081/user/dbkeys
Module galaxy.web.framework.middleware.error:149 in __call__
app_iter = self.application(environ, sr_checker)
Module
FTP issues are fixed now so things will be functional out of the box
without any of these workarounds.
On Tue, Jul 16, 2013 at 4:04 PM, Daniel Blankenberg d...@bx.psu.edu wrote:
Hey Mo,
You can use ssh to connect to the Galaxy machine. If you used cloudlaunch
to create your instance, it
Not quite next week, but an update to the tools volume and CloudMan itself
was just released so things should be working now. Sorry for the trouble
and the delay and let us know if how things are going for you now.
Cheers,
Enis
On Sat, Jul 13, 2013 at 9:27 AM, Enis Afgan afg...@gmail.com wrote:
Hi Mo,
Just like in the email I just sent, the new release should fix this. Let us
know if you have any more issues.
On Tue, Jul 16, 2013 at 6:29 PM, Dannon Baker dannon.ba...@gmail.comwrote:
Hey Mo,
The new volume we pushed out for the conference has several known issues.
Enis and I are
Before I went on that tangent, I should have said I of course agree
with 100% of what James said in the original e-mail on this thread.
For what it is worth, I believe the higher-level constructs he
outlined are essential to the long term adoption of the tool shed.
On Tue, Aug 27, 2013 at 1:59
Hi Alex,
we extracted it from the history. Normally we have no problems with it, but
this tool is something special. It generates multiple output files depending on
the input.
Greetings,
Thomas
Von: Bossers, Alex [alex.boss...@wur.nl]
Gesendet:
Hello all,
Mercurial has recently started throwing errors:
galaxy@hitmsbhpc1:~/galaxy-dist hg incoming
abort: error: _ssl.c:517: error:140770FC:SSL
routines:SSL23_GET_SERVER_HELLO:unknown protocol
It has previously worked with issues has anyone seen this before?
I don't think anything has
19 matches
Mail list logo
