Il 2013-09-23 20:43 Curtis Hendrickson (Campus) ha scritto:
Dear Galaxy Team
I was upgrading our servers with the 8/12 release, and going over the
DevNotes [1].
I noted item Pull Requets Merged #5: SAMtools indexes #188 [2].
But the file created by the pull request didn't seem to exist.
Hi,
I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2
encryption of the passwords (as stated here
http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.html
).
However, when I do add this line:
use_pbkdf2 = false
to the universe_wsgi.ini, restart
The problem is likely a collision on the tool_id; update the tool ID for one of
the wrappers and that should solve the problem.
Best,
J.
On Sep 24, 2013, at 5:30 PM, Curtis Hendrickson (Campus) wrote:
Jeremy,
We didn’t have time to factor out to toolshed just now, so we took the
Jeremy,
I'm sure that would get both tools to show up, but it seems to me that would
miss the goal of past/future reproducibility.
My goal is to have to two versions of the program available at the same time -
Cuffdiff_wrapper 0.0.5 (cuffdiff/links 1.3) the historical one that all the
current
On Tue, Sep 17, 2013 at 10:34 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hello all,
Bjoern and I were talking about doing some work on more
datatype definitions, but this raises the question about how
to handle dependencies.
First of all, complex datatypes in Galaxy are defined using
Jeremy,
I’m sure that would get both tools to show up, but it seems to me that would
miss the goal of past/future reproducibility.
My goal is to have to two versions of the program available at the same time –
Cuffdiff_wrapper 0.0.5 (cuffdiff/links 1.3) the historical one that all the
Eric,
What version of posgresql are you using? The script has a comment that
indicates you need 9.1+ (and I'm using 9.1.9), and it works out of the box
for me.
-Dannon
On Fri, Sep 20, 2013 at 7:35 AM, Eric Kuyt eric.ku...@wur.nl wrote:
Hi All,
I'm trying to do some cleanup in my test
Are you using Input Dataset steps in your workflows? The multiple inputs
feature uses these to know how to distribute inputs -- other than that no
other configuration steps are necessary.
On Tue, Sep 24, 2013 at 2:43 PM, Adam Brenner aebre...@uci.edu wrote:
Howdy,
On our local galaxy
Ahoj Honzo,
Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it
under the '[app:main]' section in the config file.
Enjoy Galaxy!
best
Martin Cech
On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala j...@hapala.cz wrote:
Hi,
I need to run Galaxy with ProFTPd, therefore I
Thanks for reporting this issue and workaround Ulf. I've committed a fix that
addresses this issue by only includeing the -split option for BED/GFF/GTF
datasets and not VCF:
https://bitbucket.org/galaxy/galaxy-central/commits/b8d8f81bed872e58b4691643de8a08fa41662e71
Best,
J.
On Sep 12, 2013,
Hello everyone,
I have configured swift object store at my infrastructure. Next i want to
configure galaxy to be able to use swift object store. I am having trouble
with configuration.
Here's what the error is:
galaxy.objectstore DEBUG 2013-09-26 08:07:05,306 Getting a connection
object for
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