On Mon, Nov 11, 2013 at 6:55 PM, John Chilton chil...@msi.umn.edu wrote:
Hey Peter,
Does your universe_wsgi.ini have enable_quotas = True set?
-John
No,
$ grep enable_quotas universe_wsgi.ini
(nothing)
I had suspected the quotas might not be working...
If the default is not to enable
Hello,
I would like to have a tool form with a two parameters:
1. Select State
2. Select Town
The options for 'Select State' are dynamically generated with
dynamic_options which calls a python function, which connects to a database
and returns the list of States. This works fine in my form xml
Hi guys,
I have a new wrapper for samtools idxstats with a working
unit test via run_functional_tests.sh run locally or on TravisCI:
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-November/017406.html
However, this
This sounds a lot like this;
http://dev.list.galaxyproject.org/galaxy-cant-find-binaries-in-tp4662442p4662444.html.
When using the local job runner (as the test framework likely does), I
believe samtools needs to be on Galaxy's path. I don't think it is
enough to just have it available as a tool
Hello Peter,
Thanks for reporting this - I've added the following Trello card for this issue.
https://trello.com/c/sN2iLCCn/99-bug-in-install-and-test-framework-1
Greg Von Kuster
On Nov 12, 2013, at 7:07 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi guys,
I have a new wrapper for
On Tue, Nov 12, 2013 at 2:37 PM, John Chilton chil...@msi.umn.edu wrote:
This sounds a lot like this;
http://dev.list.galaxyproject.org/galaxy-cant-find-binaries-in-tp4662442p4662444.html.
When using the local job runner (as the test framework likely does), I
believe samtools needs to be on
On Tue, Nov 12, 2013 at 3:32 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Nov 11, 2013 at 6:55 PM, John Chilton chil...@msi.umn.edu wrote:
Hey Peter,
Does your universe_wsgi.ini have enable_quotas = True set?
-John
No,
$ grep enable_quotas universe_wsgi.ini
(nothing)
I
On Tue, Nov 12, 2013 at 3:12 PM, John Chilton chil...@msi.umn.edu wrote:
On Tue, Nov 12, 2013 at 3:32 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Nov 11, 2013 at 6:55 PM, John Chilton chil...@msi.umn.edu wrote:
Hey Peter,
Does your universe_wsgi.ini have enable_quotas = True
I'm working with a lot of data on a cluster (condor). If I save all the
workflow intermediate data, as Galaxy does by default (and rightfully so),
it fills the drives.
How can tell Galaxy to use /tmp/ to store all intermediate data in a
workflow, and keep the result?
I imagine I'll have to work
Hi,
I found a working workaround using the deprecated page tags:
inputs
page
param name = State_id type=select dynamic_options=getStates()
label=Select State display=radio multiple=false/
/page
page
param name = Town_id type=select
dynamic_options=getTowns(State_id) label=Select
Hi Lindsay,
Nice to hear that Vipin's server worked out for you.
A reduction in the number of lines is completely expected. You should
have the same number of lines in the BED12 file as you have unique IDs
in the GFF3 file, if you want to double check. This is the same as the
number of
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