Hello all,
The next GalaxyAdmins meetup will be Wednesday, November 20, at 10am US
Central time. See the meetup
pagehttp://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_11_20
for
a link and directions for connecting to the meetup.
*GCC2013 GalaxyAdmins BoF Followup*
This is our
On Wed, Nov 13, 2013 at 12:03 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
Yesterday we discovered what Björn has communicated and added it to the
Trello card for this issue:
https://trello.com/c/sN2iLCCn/99-bug-in-install-and-test-framework-1
...
becomes the following in your
On Tue, Nov 12, 2013 at 3:33 AM, Dave Bouvier d...@bx.psu.edu wrote:
Peter,
Thanks for bringing this to our attention, we're working on fixing a number
of issues with the test framework, and hope to have more information for you
tomorrow.
--Dave B.
Hi Dave,
Good news, the BLAST+ tests
Bash is easily obtained on these systems and I think the extra functionality
available in post-Bourne shells ought to be allowed. I also question how many
people are going to run tools on *BSD since most underlying analysis tools tend
to only target Linux.
That said, shell code should be
On Thu, Nov 14, 2013 at 5:13 PM, Nate Coraor n...@bx.psu.edu wrote:
Bash is easily obtained on these systems and I think the extra functionality
available in post-Bourne shells ought to be allowed. I also question how
many people are going to run tools on *BSD since most underlying
analysis
Hi Peter,
On Nov 14, 2013, at 11:27 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Wed, Nov 13, 2013 at 12:03 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
Yesterday we discovered what Björn has communicated and added it to the
Trello card for this issue:
On Nov 14, 2013, at 12:21 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Nov 14, 2013 at 5:13 PM, Nate Coraor n...@bx.psu.edu wrote:
Bash is easily obtained on these systems and I think the extra functionality
available in post-Bourne shells ought to be allowed. I also question how
Forgot to cc galaxy-dev on this, it is too riveting not to post :).
-John
-- Forwarded message --
From: John Chilton chil0...@umn.edu
Date: Thu, Nov 14, 2013 at 10:00 AM
Subject: Re: [galaxy-dev] Managing Data Locality
To: Paniagua, Eric epani...@cshl.edu
Hey Eric,
Sorry for
If, by current installation methods you are not referring to Tool Shed
repository installation methods for installing tool dependencies, then please
read no further.
For installing tool dependencies along with repositories from the Tool Shed,
fabric is currently being used. However, it's been
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
I'd like to contribute what I've learnt today to this particular page.
As it is locked, I am unsure how to contribute my information, so I'm
posting here in the hopes that someone with rights will update it.
Formatted in (pandoc compatible) Markdown
Hello, I am going to move your question over to the
galaxt-...@bx.psu.edu mailing list to give it better visibility to the
development/local install community.
http://wiki.galaxyproject.org/MailingLists#The_lists
I didn't find it over here already, but apologies if double posted.
Also, since I
Carrie,
This turned out to be an issue with Torque 4 changing from pbs_submit() to
submit_pbs_hash() procedure while both pbs-drmaa and pbs-python were still
using pbs_submit(). The maintainer of the pbs-drmaa library
(http://sourceforge.net/p/pbspro-drmaa/wiki/Home/ ) Mariusz Mamonski
Hi,
anyone has seen the following bug in Galaxy November release?
galaxy.jobs.handler ERROR 2013-11-15 00:07:41,008 Failed to generate job
destination
Traceback (most recent call last):
File /usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py, line
311, in __check_if_ready_to_run
Hey Bjoern,
Can you post your job_conf.xml or send it to galaxy-b...@bx.psu.edu
if it has something sensitive in it, alternatively your runner urls if
you are still using the older format for specifying these things? Is
this for every job or just certain tools?
-John
On Thu, Nov 14, 2013 at
Hi John,
please find attached my jobs_conf.xml file. I was not able to find any
systematic in that error. It seems to happen not so often.
Thanks,
Bjoern
Hey Bjoern,
Can you post your job_conf.xml or send it to galaxy-b...@bx.psu.edu
if it has something sensitive in it, alternatively
15 matches
Mail list logo
