Hello Rui,
The problem here is that flexbar repository on the main Galaxy Tool Shed does
not define a relationship between the flexbar tool contained within the
repository and a recipe for installing the flexbar binary dependency. The
flexbar tool config includes the following requirements
Hello Evan,
Thanks a bunch for the error report! I can confirm the problem and a
hack to avoid it can be found here -
https://github.com/jmchilton/galaxy-central/commit/306a86558a7ee7be1bc2d68cd939b16b5f1863d4.patch.
I am going to give someone more familiar with the core GUI stuff a
chance to
Hello dev-team,
With the current state, is it possible to write an interactive page for a
tool in Galaxy?
In my case, I m considering to build a tool page with JavaScript embed in
XML file, my expectation is to behave the Galaxy tool page as google
translate page with option instant translation
Hey Evan,
Out of curiosity, are you trying to update MSI's CLIA pipeline to
utilize tool shed installed tools? (It sounds kind of like yes.)
I don't think that file you mentioned exists in either place - is it a
typo or maybe a configuration file with overridden location in
universe_wsgi.ini?
Thanks John. I guess I'm looking at options enable_tool_shed_install
and tool_shed_install_config_file that were added in rev 6398 and
dropped in rev 6747 when the tool migration scripts were added. I
don't know why they were dropped, but they would be immensely useful
today.
This is related to
Hi all,
Is anyone working on (or has already created) wrappers for GATK 3.0?
Specifically, I'm looking for a wrapper for genotypeGVCFs, but it seems
like I would want all the GATK wrappers to be updated. Any help is highly
appreciated!
- Nik.
--
Nikhil Joshi
Bioinformatics Analyst/Programmer