Also through toolshed, version 0.5.9-r16. An example error on our part is
(SamToBam):
Error extracting alignments from
(/galaxy/galaxy-dist/database/files/067/dataset_67090.dat), [samopen] SAM
header is present: 25 sequences.
Parse error at line 261924: sequence and quality are inconsistent
Hi,
Galaxy provides the option for users to change their login email. However, if
they do, they loose access to their ftp folder. Is there an option to allow
galaxy to rename these folders?
Best,
Geert
___
Please keep all replies on
Hi,
I've reported the jobs running out of order issue before.
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014777.html
We use mysql database. It seems rather random, but it might be only jobs taking
multiple inputs. I'll check that if it happens.
I've not found a solution yet.
Hi,
Could somebody point me to the place where I can create a ticket for the
following feature:
- We want to have tools available only to users who provided a licence for this
tool.
- To prevent very long email lists (see example on dev-only tools), I'd like to
have a group 'have_licence'
19:42
Aan: Vandeweyer Geert
CC: galaxy-...@bx.psu.edu
Onderwerp: Re: [galaxy-dev] pass user groups to dynamic job runner
Feature request received.
The following changeset demonstrates how one could implement this
https://github.com/jmchilton/galaxy-central/commit
them from the old install.) could I then
reinstall all shed tools, or will there be conflicts from info in the MySQL
database?
Best
Geert
Van: Dave Bouvier [d...@bx.psu.edu]
Verzonden: dinsdag 11 februari 2014 22:56
Aan: Vandeweyer Geert; galaxy-dev
Hij Bjoern,
I finally got around to trying your suggestions. It worked out nicely, so
thanks for that!
I've added the modules as an example to the toolshed, as I didn't find an
example yet. Three modules (threads, threads::shared and Thread::Queue) are
bundled in a dependency definition
