Re: [galaxy-dev] tool_data_table.xml and *.loc not installed with repository

I downloaded the latest galaxy-dist this morning and I used the test toolshed to test my repository first before I upload it to the main toolshed. Thanks Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. (650) 428-6023 office | (408) 605-3938 mobile bcr

Re: [galaxy-dev] code example for improved error handling

Thanks, greatly appreciated! Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. (650) 428-6023 office | (408) 605-3938 mobile bcr...@completegenomics.com<mailto:bcr...@completegenomics.com> From: Scott McManus mailto:scottmcma...@gatech.edu>>

Re: [galaxy-dev] code example for improved error handling

the July news brief I understood that you can now add code to the xml to >check the stdout and std error for messages and I was wondering if you have >any documentation or sample code for that in any published tool. Thanks Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete

[galaxy-dev] code example for improved error handling

Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error handling. Is there any sample code or documentation available? Thanks Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Com

[galaxy-dev] Complete Genomics CGA Tools� in Galaxy

stions for future development, or contact us at profs...@completegenomics.com<mailto:profs...@completegenomics.com> Best regards Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. The contents of this e-mail and any attachme

Re: [galaxy-dev] tool_data_table_config.xml.sample

the test toolshed and uploaded the same tar ball there, none of the tools loaded properly. Hope this helps. Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. (650) 428-6023 office | (408) 605-3938 mobile bcr...@completegenomics.com<mailto:bcr...@completegenomics

Re: [galaxy-dev] tool_data_table_config.xml.sample

Hi Greg I just created a repository on the main toolshed and upload a tar ball. I got the same error messages again as described in the email thread below. Regards Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. (650) 428-6023 office | (408) 605-3938 mobile

Re: [galaxy-dev] tool_data_table_config.xml.sample

instance on our server the tools and .loc file install fine (except that I don't have my datatypes defined right, working on that). Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc. (650) 428-6023 office | (408) 605-3938 mobile bcr...@completegenomic

Re: [galaxy-dev] tool_data_table_config.xml.sample

d tools is show this explanation: [Errno 2] No such file or directory: '/var/opt/galaxy/g2cmnty/tmp/work_tmp/cg_crr_files.loc' But I know the file is there …. Any suggestions? - I attached the tar ball for a closer look. Thanks Birgit Crain, Ph.D. | Sr. Professional Services Scientist

Re: [galaxy-dev] tool_data_table_config.xml.sample

From: Greg Von Kuster mailto:g...@bx.psu.edu>> Date: Tuesday, June 12, 2012 1:18 PM To: Birgit Crain mailto:bcr...@completegenomics.com>> Cc: "galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>" mailto:galaxy-dev@lists.bx.psu.ed

[galaxy-dev] tool_data_table_config.xml.sample

Hi I'm developing tools that use an entry in the tool_data_table_config.xml file. For upload into a repository I created a tool_data_table_config.xml.sample file with the corresponding table entry. The structure for the file I copied from the tool_data_table_config.xml. in the galaxy download.