Re: [galaxy-dev] Impersonate a User

2012-12-11 Thread Edward Hills
Hi Greg, Try clicking the logout button. That should logout of the user you are impersonating and back into you. Although, this does have a few quirks also and may log you right out. Don't forget that when you are impersonating someone the history may not be automatically loaded and you will have

[galaxy-dev] xgrid cluster computing

2012-11-05 Thread Edward Hills
Hi Galaxy team, So our university has decided to switch our xgrid clusters back on and we are looking to set Galaxy up on these. Has anyone got (or tried) to set up Galaxy on xgrid before? xgrid supposedly conforms to DRMAA so technically Galaxy should work, correct? Cheers, Ed

Re: [galaxy-dev] Parallelism tag and job splitter

2012-10-31 Thread Edward Hills
is chosen? Cheers, Ed On Wed, Oct 31, 2012 at 9:46 PM, Peter Cock p.j.a.c...@googlemail.comwrote: On Wednesday, October 31, 2012, Edward Hills wrote: Thanks Peter. My next question is, I have found that VCF files don't get split properly as the header is not included in the second file

[galaxy-dev] Parallelism tag and job splitter

2012-10-30 Thread Edward Hills
Hi Galaxy-Team, After reading a message on this mailing list about the job splitter I began to investigate what and how this is used. Unfortunately I have been unable to find any documentation on your website for it. Am I blind and missing it or is it yet to be properly documented? Sorry if

Re: [galaxy-dev] Parallelism tag and job splitter

2012-10-30 Thread Edward Hills
be done. I see a class Text ( data ) which looks like every datatype is sent to. Would it be best to implement a VCF class which is called when the datatype is VCF? Cheers, Ed On Wed, Oct 31, 2012 at 12:35 PM, Peter Cock p.j.a.c...@googlemail.comwrote: On Tue, Oct 30, 2012 at 11:20 PM, Edward

[galaxy-dev] Workflow Queue

2012-09-12 Thread Edward Hills
that are going to be run. This is because I wish to perform some pre-run analysis on all the tools in the workflow before they get executed. Thanks, Edward Hills Department of Biochemistry, University of Otago, Dunedin, New Zealand. ___ Please keep

[galaxy-dev] Refreshing side bar

2012-08-11 Thread Edward Hills
Hi Guys, So i'm looking at having the dataset history item that is currently running to load in text from a txt file, re-reading the txt file every few seconds or so. I have found where it gets displayed in the /templates/root/history_common.mako and have added %include file=test.txt/ so that

[galaxy-dev] Jobs waiting in job queue

2012-07-30 Thread Edward Hills
Hi Galaxy team, This is going to be a very unhelpful message but I hope you have some ideas to point me in the right direction! For some reason our local Galaxy instance (set up with the production server guide on the wiki minus all the fancy cluster stuff) is refusing to run jobs except after a

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-10 Thread Edward Hills
RE: The chat about NZ/AUS communication us here at Otago University (Dunedin, NZ) are very very keen for this. Please email us at edward.hi...@otago.ac.nz if this does decide to take off :) Cheers, Ed ___ Please keep all replies on the list

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-28 Thread Edward Hills
Hi Ann, We are in the process of doing the same thing here at the University of Otago (New Zealand). If we are able to sort something via the timezone difference (we are GMT+12, first to see the sun!) we would very much be interested. Cheers, Ed Hi everyone - Here at the University of Iowa we

Re: [galaxy-dev] Looking where to edit web view

2012-03-20 Thread Edward Hills
Hello Galaxy team, I've recently begun building a resource usage monitor / predictor for Galaxy as part of my Computer Science Honours degree and I was wanting to at some later stage in my project, once the actual resource monitor is built, to incorporate it to the actual Galaxy web interface.