Nate,
You were right: I was using Python 2.4; should have checked.
I changed the symlink in /opt/galaxy-python to point at a compiled version of
Python 2.7. I then ran the run.sh script, only to get the same errors again.
I've even tried Python 3.2. Any clues? I run ROCKS 5.3.
Thanks!
Nikhil
On Sep 2, 2011, at 12:43 PM, Nate Coraor wrote:
IT Support wrote:
Greetings,
I attempted to install Galaxy on a ROCKS 5.3 cluster. I checked out Galaxy
to a location commonly accessible by all analysis nodes. I then set the path
to Python 2.7 like so:
export PATH=/opt/galaxy-python/python:$PATH
However, executing run.sh gives me the error at the end of this message. The
strange thing is that Galaxy runs fine on a CentOS 5.6 virtual machine.
Any help would be much appreciated. Thanks!
Hi,
It looks despite adjusting $PATH, you're still getting Python 2.4.
$PATH should point to the directory which contains the `python` binary,
could this be:
/opt/galaxy-python/python/bin ?
--nate
-
Traceback (most recent call last):
File ./scripts/paster.py, line 34, in ?
command.run()
File
/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py,
line 84, in run
invoke(command, command_name, options, args[1:])
File
/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py,
line 123, in invoke
exit_code = runner.run(args)
File
/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py,
line 218, in run
result = self.command()
File
/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py,
line 276, in command
relative_to=base, global_conf=vars)
File
/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py,
line 311, in loadapp
return loadapp(
File
/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py,
line 204, in loadapp
return loadobj(APP, uri, name=name, **kw)
File
/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py,
line 225, in loadobj
return context.create()
File
/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py,
line 625, in create
return self.object_type.invoke(self)
File
/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py,
line 110, in invoke
return fix_call(context.object, context.global_conf, **context.local_conf)
File
/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/util/fixtypeerror.py,
line 57, in fix_call
val = callable(*args, **kw)
File /opt/galaxy-dist/lib/galaxy/web/buildapp.py, line 90, in app_factory
add_controllers( webapp, app )
File /opt/galaxy-dist/lib/galaxy/web/buildapp.py, line 39, in
add_controllers
module = __import__( module_name )
File /opt/galaxy-dist/lib/galaxy/web/controllers/admin.py, line 310
link=( lambda item: (dict( operation=Manage users and groups,
id=item.id, webapp=galaxy ) if not item.default else dict(
operation=Change amount, id=item.id, webapp=galaxy )) ),
-
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