There is a tutorial on the home page of Galaxy (uploading data using FTP) that shows you step by step how to go through the uploading process. Hope this helps
Giuseppe Ianiri, Ph.D. ________________________________________ From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] on behalf of James Meador [jmea...@momentapharma.com] Sent: Saturday, December 01, 2012 10:08 PM To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] The qiuck way to upload large file Hi All, Thanks for the tip, but could you specify what directory to ftp them to? I have been wondering about this myself but have not found an answer yet. Also, from my limited testing on a local setup on Mac OS X 10.6, it appears that when you upload a file (170 MB fastq file in my case), it gets placed into a directory within /usr/local/Galaxy/database/files/000/ into a file called, "dataset_1.dat". This file is just a text file of the original fastq file so it might be possible to ftp to there but I am not sure that the database or Galaxy will automatically be able to read this. Can anyone comment on how to ftp files to what directory that Galaxy will be able to add to the History? Thanks in advance, Jim On Dec 1, 2012, at 8:40 AM, shamsher jagat wrote: FTP or URL On Sat, Dec 1, 2012 at 5:37 AM, 泽 蔡 <caizexi...@yahoo.com.cn<mailto:caizexi...@yahoo.com.cn>> wrote: Hi all, I'm a new guy of galaxy and bioinformatics. I read the document of galaxy, but it's so hard to find what I need. I already set up a locale instance of galaxy, it works fine. The problem is I need to analysis large data, but the "upload file" is so slow, is there some ways I can upload large file quickly? ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ***************************************************************************** This email message and any attachments are confidential and may be privileged. It is intended only for the individual(s) to whom it is addressed and may not be saved, copied, printed, disclosed or otherwise used by anyone else. If you are not the intended recipient, kindly notify the sender and delete this email and any attachments immediately. Momenta Pharmaceuticals, Inc. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
