Re: [galaxy-dev] Conditionally showing certain form elements on tool page

2012-08-16 Thread John Patterson
On 08/15/2012 08:59 PM, Dan Tenenbaum wrote: Hi all, I'm trying to wrap my head around what the conditional tag does...it looks like it doesn't do what I would like. I want to create a tool that allows the user to upload a data file and then have it run through one or more filters. Each filter

Re: [galaxy-dev] code example for improved error handling

2012-08-16 Thread John Patterson
On 08/16/2012 03:02 PM, Birgit Crain wrote: Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error handling. Is there any sample code or documentation available? Thanks *Birgit Crain, Ph.D.*| Sr.

Re: [galaxy-dev] Conditionally showing certain form elements on tool page

2012-08-15 Thread John Patterson
On 08/15/2012 08:59 PM, Dan Tenenbaum wrote: Hi all, I'm trying to wrap my head around what the conditional tag does...it looks like it doesn't do what I would like. I want to create a tool that allows the user to upload a data file and then have it run through one or more filters. Each filter

[galaxy-dev] Multi-level conditional output files

2012-08-08 Thread John Patterson
Hello! The wiki entry on dealing with the filter tags is wonderful, but I seem to hit its limitations, unless someone has experience with multi-level conditionals in the input. For example in my XML, conditional name=Build_Settings param name=SettingsType type=select label=Settings to

[galaxy-dev] Galaxy output not showing on tool success, indicating job failure.

2012-08-06 Thread John Patterson
Hello. I am an undergraduate working on a tool very similar to Tophat. My question is probably very basic, but I am having issues displaying the output. I am assuming is giving me the failed run boxes, even though my tool completes execution and generates its files. Note that I am not working