[galaxy-dev] Dynamically decide where a Galaxy tool runs
Hi, I see in documentation that Galaxy tools may be configured to run on a cluster (http://wiki.galaxyproject.org/Admin/Config/Performance/Clusterhttp://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#DRMAA). This is something our research group is interested in, but it's not possible to specify which cluster the particular tool should run on ahead of time. Therefore, is it possible to specify the cluster to run when the tool is actually being used when composing the workflow from Galaxy? Thank you, Saliya -- Saliya Ekanayake esal...@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Dynamically decide where a Galaxy tool runs
Thank you. I have two follow up questions. 1.) Is there a documentation on writing a deployer, so we can extend Galxy to deploy to a different system, say Amazon EC2 or Azure? 2.) Is it possible to show information about these destinations in the front end UI of Galaxy? Thank you, Saliya On Fri, Jul 12, 2013 at 3:02 PM, James Taylor ja...@jamestaylor.org wrote: On Fri, Jul 12, 2013 at 2:42 PM, Saliya Ekanayake esal...@gmail.com wrote: Hi, I see in documentation that Galaxy tools may be configured to run on a cluster (http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ). This is something our research group is interested in, but it's not possible to specify which cluster the particular tool should run on ahead of time. This is definitely possible, see Mapping tools to destinations on this page: http://wiki.galaxyproject.org/Admin/Config/Jobs -- Saliya Ekanayake esal...@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Developing Tools
Thank you. The tool guide seems to have a good sample to begin with. Saliya On Thu, Jun 20, 2013 at 2:53 AM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi Saliya, the Galaxy documentation is a good starting point for your questions: http://wiki.galaxyproject.org/ http://wiki.galaxyproject.org/Admin/Tools/Add%20Tool%20Tutorial Also have a look at the Tool Shed: http://wiki.galaxyproject.org/Admin/Tools/Add%20Tool%20Tutorial You can search for Galaxy related topics with: http://galaxyproject.org/search/web/ Hope that helps as starting point. Galaxy will take care for your cluster integration. Cheers, Bjoern Hi, I am new to development with Galaxy and wonder if someone could kindly help me out with the following. 1.) A step-by-step guide on how to develop a tool 2.) Are tools limited to simple functions that run on a single node? 3.) When Galaxy is run on cloud (with EC2) how does it utilize worker nodes? Is it such that steps in my workflow get load balanced into nodes? Thank you, Saliya -- Saliya Ekanayake esal...@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Saliya Ekanayake esal...@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Developing Tools
Hi, I am new to development with Galaxy and wonder if someone could kindly help me out with the following. 1.) A step-by-step guide on how to develop a tool 2.) Are tools limited to simple functions that run on a single node? 3.) When Galaxy is run on cloud (with EC2) how does it utilize worker nodes? Is it such that steps in my workflow get load balanced into nodes? Thank you, Saliya -- Saliya Ekanayake esal...@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
