[galaxy-dev] Add a download process to a job handler in history queue
Hello, I developed a script to download file to Galaxy from other platform. If the size of the file is large, the process may take several minutes and I can't to anything else in Galaxy. Is there a way to add the download process in a job handler and add it to history queue? Any help is more than welcome! Thank you in advance! ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Problem with Upload File tool via url
Dear all, My problem is when I use the /Upload File /tool via URL, I get the message The uploaded file contains inappropriate HTML content. I tried a lot of file formats. In our development server this tool works fine but in our public server we have this problem. Do you have any solution? Kind regards, Zinon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Problem with Upload File tool via url
Danno, thank you for your response. Yes, I tried with both curl and wget. They work and they respond with the data. I tried the same file path in test galaxy server (https://test.g2.bx.psu.edu/) and it's working properly. Thanks, Zinon On 1/3/2013 2:53 ??, Dannon Baker wrote: My hunch is that the source location is probably responding with an error page and not the actual content you're looking for. Is the source URL behind any authentication scheme, and can you verify that from, say, curl or wget that it works and responds with the data? -Dannon On Fri, Mar 1, 2013 at 7:16 AM, Zinonas Antoniou z.anton...@gmail.com mailto:z.anton...@gmail.com wrote: Dear all, My problem is when I use the /Upload File /tool via URL, I get the message The uploaded file contains inappropriate HTML content. I tried a lot of file formats. In our development server this tool works fine but in our public server we have this problem. Do you have any solution? Kind regards, Zinon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] How to call a cgi web page in a galaxy folder from a script?
Hello, Now I have a web page (cgi) in a server like www.example.com/myexample.py I want to have the myexample.py file under a galaxy folder. Then, how will I call it inside a script in galaxy? Thank you in advance, Zinon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Associate a user with a Galaxy user via e-mail like OpenID does
Hello, I have the connection using OAuth and I get the email of a user from other platform. Next, I want to associate this user with a user of Galaxy, like the OpenID does. Can anyone describe me explicitly the procedure should I do? What files should I change? Thank you in advance, Zinon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Upload file from url
Hello, I want to upload a file from a script. A user will select a file, and the full path of the file will be saved, like http://www.example.com/myfile.csv I want to run the upload module of galaxy to save this file from the http path to galaxy. Do you have any suggestions please? Thank you in advance, Zinon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
