Amazing!
All the best from Germany!
Bjoern
2014-08-14 15:21 GMT+02:00 graham etherington (TSL)
graham.ethering...@sainsbury-laboratory.ac.uk:
Dear UK Galaxy-devs,
We're delighted to announce the launch of the UK Galaxy Community.
Please visit the site and have a look around:
I'm all in! :)
2014-08-14 17:11 GMT+02:00 Sebastian Schaaf sch...@ibe.med.uni-muenchen.de
:
Not to say 'exemplary' - really great :).
@Björn: phone call within the next days?
Cheers,
Sebastian
bjoern.gruen...@googlemail.com schrieb:
Amazing!
All the best from Germany!
Bjoern
Hi,
Galaxy stores all information about a tool and it's parameters in a
database.
I suppose if something is wrong with your tool, under some circumstances,
it can't be stored in the database.
Cheers,
Bjoern
2014-08-12 9:23 GMT+02:00 Martin Christiansen
martinchristianse...@hotmail.com:
Hi
Iry,
are you seeing the same error with:
https://toolshed.g2.bx.psu.edu/view/iuc/snpeff
Cheers,
Bjoern
2014-08-06 19:12 GMT+02:00 Iry Witham iry.wit...@jax.org:
Hi Greg,
That resolved the internal server error issue. Now I need to figure out
the issue with the dependencies. I was
Hi Peter,
2014-07-31 10:57 GMT+02:00 Peter Cock p.j.a.c...@googlemail.com:
Hi Dave,
You are right that on closer inspection I've mixed tool_dependencies.xml
and repository_dependencies.xml *again*. Evidentially my mental model
does not match Greg's here:
(*) I need to define a tool
Hi Nate,
we encountered an addition bug related to the object-store:
Traceback (most recent call last):
File /usr/local/galaxy/galaxy-
dist/lib/galaxy/jobs/runners/__init__.py, line 153, in prepare_job
job_wrapper.prepare()
File /usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py,
Hi,
I have configured to use the hierarchical object store but as soon as I try
to reset the filetpye of a dataset Galaxy is crashing with:
galaxy.objectstore DEBUG 2014-06-12 14:39:21,180 Using preferred backend
'files3' for creation of MetadataFile 5963
132.230.153.57 - - [12/Jun/2014:14:39:20
Hi,
I encountered the following bug during my testing of the latest stable
release:
Error - type 'exceptions.AttributeError': 'SpecifiedDateListGrid' object
has no attribute 'info_text'
URL:
http://galaxy.uni-freiburg.de:9001/jobs/specified_date_handler?specified_date=2014-06-04
File
Hi Vincent,
I think there was an error that was fixed recently. If you can, please try
yo upgrade or wait a few more days until the new galaxy-dist version is
released.
Bjoern
2014-02-04 navratil navra...@prabi.fr:
Dear galaxy-dev team,
We have configured a galaxy-dist server (stable
Hi,
to access variables in a conditional you need to write something like that:
$rangeorlist.rngstart
$rangeorlist.rend
$rangeorlist.stepsize
Cheers,
Bjoern
2014-02-04 Ketan Maheshwari ketancmaheshw...@gmail.com:
Hi,
While developing a tool, I am facing Cheetah code issue. I looked up the
Hi,
something like that is also possible:
((
params['settingsType'] == custom and
params['unmapped_read_file'] is True
))
So I assume:
outtype == 0 or outtype == 2
will also work.
Cheers,
Bjoern
2014-01-31 Geert Vandeweyer
Hi Alex,
there is a difference in
http://toolshed.g2.bx.psu.edu/view/devteam/package_bowtie2_2_1_0 and
http://toolshed.g2.bx.psu.edu/view/devteam/bowtie_wrappers
The package_* is installing the binary for you and can be used by other
programs as well. bowtie_wrappers contains the actual wrappers
I have no clue what is happening. Attached is my working *.loc flile.
See select-box is also filtered by the db-key of your dataset, but I think
you habe hg19 as dbkey, otherwise you would not see the hg19 in the select
box. There must be something wrong in you *.log file.
2014-01-30 Briand,
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