Dear all,
I want to build a Galaxy tool to run R script.
Do you know if there is already such tool or similar function?
If you can share with me, I would very appreciate your help.
Thank you,
Bo Liu
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Please keep all replies on the list
that helps !
Roman
On 2011-06-29 12:02, liu bo wrote:
Thank you, Roman.
Our app invoke a workflow server.
I guess Galaxy has a self container like Tomcat, that is why we can
access it via 127.0.0.1 from browser.
I know in Tomcat, there is a file catalina.sh for setting JAVA_OPTS.
Is there a similiar
Dear all,
I have added an application to Galaxy's Tools.
Now there occurs an error java.lang.OutOfMemoryError: Java heap space.
Do you know how to set java heap size in Galaxy?
Thank you very much.
Best regards,
Bo
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Please keep all
...@gmail.com wrote:
Hi Liu,
if you set up your application in the XML to run with Java, like java -jar
yourapplication.jar, it is sufficient to add the -Xmx parameter. Something
like
java -Xmx512m -jar yourapplication.jar
Greets
---
Marco
On 27 June 2011 12:15, liu bo liub...@gmail.com wrote
