Thanks. So I should just wait for that changeset to make it into the
stable release and update my code?
When could I let my users know to expect that? I think they'll just
use command line tophat until then.
-Greg
On Fri, Dec 14, 2012 at 2:41 PM, Jeremy Goecks jeremy.goe...@emory.edu wrote:
I don't understand why the option is offered in the galaxy UI if it's
not available, or is there some kind of bug, or wrong version of
tophat2?
The parameter has been deprecated in recent versions of Tophat; the wrapper
has been updated in -central changeset 4b4ea9952336 to reflect this.
J.
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