Re: [galaxy-dev] Parsing input format in galaxy tools

2014-02-14 Thread Nikos Sidiropoulos 
Worked.

Thanks Björn!


2014-02-14 19:41 GMT+01:00 Björn Grüning bjoern.gruen...@gmail.com:

 Hi Nikos,

 try $input.ext ...

 Cheers,
 Bjoern

  Hi all,
 
 
  I'm writing a tool in Galaxy and I need to parse the input file's
  format (bam, bed, etc) to pass it as a variable to the command.
 
 
  Something like:
 
 
  command.sh $input ${input.format} $output
 
 
  Is there a way to get it?
 
 
  Bests,
  Nikos
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Re: [galaxy-dev] Parsing input format in galaxy tools

2014-02-14 Thread Björn Grüning 
Hi Nikos,

try $input.ext ...

Cheers,
Bjoern

 Hi all,
 
 
 I'm writing a tool in Galaxy and I need to parse the input file's
 format (bam, bed, etc) to pass it as a variable to the command.
 
 
 Something like:
 
 
 command.sh $input ${input.format} $output
 
 
 Is there a way to get it?
 
 
 Bests,
 Nikos
 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:
   http://lists.bx.psu.edu/
 
 To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/


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