Re: [galaxy-dev] Tool wrapper XSD

2013-02-22 Thread Jean-Frédéric Berthelot
Is there a Galaxy XML tool wrapper XSD ? https://github.com/JeanFred/Galaxy-XSD I worked more on this XSD. It now passes 181 (and fails on 163) of the 352 tools packaged in galaxy-dist − it starts being somehow useful. Many wrappers also use constructs which are not yet documented on the

Re: [galaxy-dev] Tool wrapper XSD

2013-02-20 Thread Jean-Frédéric Berthelot
Hi, If you are going to write one and want a starting point, here is the schema I used Thanks John for sharing your XSD. I forked and started to complete it at: https://github.com/JeanFred/Galaxy-XSD I worked on it until my own tool wrapper passed, but it needs more work for any other

Re: [galaxy-dev] Tool wrapper XSD

2013-02-19 Thread James Taylor
On Tue, Feb 19, 2013 at 3:39 AM, Pierre Pericard pierre.peric...@sb-roscoff.fr wrote: Is there a Galaxy XML tool wrapper XSD ? No, but if anyone would like to make such a schema we would be happy to include it. -- James Taylor, Assistant Professor, Biology/CS, Emory University

Re: [galaxy-dev] Tool wrapper XSD

2013-02-19 Thread John Chilton
Hey Pierre, If you are going to write one and want a starting point, here is the schema I used for incorporating Galaxy tools into a Java web service workflow framework called TINT: https://github.com/jmchilton/TINT/blob/master/projects/TropixGalaxy/schema/galaxy.xsd It is mostly a subset of