galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] jobs submitted to a cluster
My guess is Galaxy is deleting the directory because it believe the job is in
error because of some communication problem while polling your DRM via DRMAA -
Galaxy thinks the job has failed before it has even been
van Bollig [mailto:boll0...@umn.edu]
>> Sent: Thursday, June 12, 2014 9:27 AM
>> To: Shrum, Donald C
>> Cc: galaxy-dev@lists.bx.psu.edu
>> Subject: Re: [galaxy-dev] jobs submitted to a cluster
>>
>> Hey Donny,
>>
>> What is the value of keep_compl
:27 AM
> To: Shrum, Donald C
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] jobs submitted to a cluster
>
> Hey Donny,
>
> What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could
> it be that your spool is flushing completed jobs
ubject: Re: [galaxy-dev] jobs submitted to a cluster
Hey Donny,
What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could
it be that your spool is flushing completed jobs immediately? I ran into issues
the other day with libdrmaa requiring at least keep_complete = 60
Hey Donny,
What is the value of keep_completed on your queue (from qmgr -c 'p
s')? Could it be that your spool is flushing completed jobs
immediately? I ran into issues the other day with libdrmaa requiring
at least keep_complete = 60 seconds to properly detect completed jobs
and clean up after it
