(moving to galaxy-dev) If the server won't start, there should be log messages describing the problem. What do the log messages say?
On Oct 19, 2012, at 9:30 AM, Sachit Adhikari wrote: > Thanks but after adding those lines when I stop and started the server using > --daemon mode, the server is not working? What might be the problem? > > On Fri, Oct 19, 2012 at 9:01 AM, Jeremy Goecks <jeremy.goe...@emory.edu> > wrote: > You'll need to update the tool_data_table_conf.xml file in your Galaxy home > directory. > > If you haven't made changes to the file, you can copy > tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made > changes, add these entries to the file: > > -- > <table name="bowtie2_indexes" comment_char="#"> > <columns>value, dbkey, name, path</columns> > <file path="tool-data/bowtie2_indices.loc" /> > </table> > > <table name="tophat2_indexes" comment_char="#"> > <columns>value, dbkey, name, path</columns> > <file path="tool-data/bowtie2_indices.loc" /> > </table> > -- > > Finally, please direct questions about local Galaxy installations to the > galaxy-dev mailing list: galaxy-...@bx.psu.edu > > Best, > J. > > On Oct 19, 2012, at 2:58 AM, Sachit Adhikari wrote: > >> I am getting this error in Bowtie2 and Tophat2: >> Data table named 'bowtie2_indexes' is required by tool but not configured >> Data table named 'tophat2_indexes' is required by tool but not configured. >> >> How can I solve it? Thanks >> ___________________________________________________________ >> The Galaxy User list should be used for the discussion of >> Galaxy analysis and other features on the public server >> at usegalaxy.org. Please keep all replies on the list by >> using "reply all" in your mail client. For discussion of >> local Galaxy instances and the Galaxy source code, please >> use the Galaxy Development list: >> >> http://lists.bx.psu.edu/listinfo/galaxy-dev >> >> To manage your subscriptions to this and other Galaxy lists, >> please use the interface at: >> >> http://lists.bx.psu.edu/ > >
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