John,
Questions about local installs are best directed to galaxy-dev, so I've moved
the question to this list.
>> While executing cuffcompare, I encountered this error message:
>>
>> Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'
>>
>> I was practicing RNA-seq analysis steps on newly installed galaxy to test if
>> i could easily analyze my data.
>>
>> I could run cufflinks and cuffdiff through galaxy, but i'm unable to run
>> cuffcompare.
>>
>> how should i solve this problem?
>>
>> thanks a lot!
A recent change set has made Cuffcompare compatible with v1.0.3:
https://bitbucket.org/galaxy/galaxy-central/changeset/f4b98c453389
You'll need to update your Galaxy instance with this change set for Cuffcompare
to work; also note that the change set is in galaxy-central, not galaxy-dist.
Best,
J.
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