Re: [galaxy-dev] Galaxy: Dependency error htseq_count

2013-03-22 Thread Lance Parsons
Glad that everything works now for you. The Get Updates functionality won't work since this is a new version of the tool (updated version of HTSeq package). Since the updated version could generate different results with the same input, Galaxy keeps the old version around for reproducibility

Re: [galaxy-dev] Galaxy: Dependency error htseq_count

2013-03-11 Thread Lance Parsons
I have posted an updated version of the htseq-count tool in the toolshed that uses and updated version of the HTSEQ count package (0.5.4p1) and hopefully addresses the installation issue you have experienced. Please try it out and let me know if you still have problems. Lance Joachim Jacob

[galaxy-dev] Galaxy: Dependency error htseq_count

2013-03-05 Thread Joachim Jacob | VIB |
Hi Lance, [apologies for directly emailing to you and not through the galaxy-dev list. I will post it on the dev list later on] I am trying to install htseq-count, but it fails during the dependency installation of htseq. The error I get is: error: can't create or remove files in install

Re: [galaxy-dev] Galaxy: Dependency error htseq_count

2013-03-05 Thread Lance Parsons
Hi Joachim, It seems that the error is because your system is trying to install the library files to lib64/python instead of just lib/python. For reasons I don't quite understand, the setup.py installation fails when that directory doesn't exist (I would think it would just create it, but