92121
Tel: 858-736-3584
E-mail: jdu...@illumina.com
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Wednesday, May 25, 2011 9:24 AM
To: Duddy, John
Cc: James Taylor; galaxy-...@bx.psu.edu Dev
Subject: Re: [galaxy-dev] Getting binary programs into Galaxy distribution?
D
]
> Sent: Tuesday, May 24, 2011 11:51 PM
> To: Duddy, John
> Cc: galaxy-...@bx.psu.edu Dev
> Subject: Re: [galaxy-dev] Getting binary programs into Galaxy distribution?
>
> John, I'll take a look at the program. There isn't a great way to do
> this until the depend
su.edu Dev
Subject: Re: [galaxy-dev] Getting binary programs into Galaxy distribution?
John, I'll take a look at the program. There isn't a great way to do
this until the dependency installation system is working. A thin
python wrapper (using Cython) would be the usual trick we would use
John, I'll take a look at the program. There isn't a great way to do
this until the dependency installation system is working. A thin
python wrapper (using Cython) would be the usual trick we would use.
However: have you considered just using cat? This should be completely
valid for gzip (a
There is a C program for merging Gzip files (gzjoin) that I'd love to rely on
for a core Galaxy capability. Is there a standard way to get things like this
included in Galaxy? Recoding it in Python would be a bit of a pain, and might
be a lot slower due to the IO layer not allowing the reuse of
