Re: [galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-21 Thread Fields, Christopher J
On May 20, 2013, at 3:08 PM, Nate Coraor wrote: > On May 20, 2013, at 3:31 PM, Fields, Christopher J wrote: > >> On May 20, 2013, at 9:45 AM, Nate Coraor >> wrote: >> >>> On May 19, 2013, at 11:41 PM, Fields, Christopher J wrote: >>> I've been seeing this error popping up quite a bit rec

Re: [galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-21 Thread Fields, Christopher J
On May 21, 2013, at 2:13 PM, Christopher Fields wrote: > On May 20, 2013, at 3:08 PM, Nate Coraor wrote: >> ... >> Hi Chris, >> >> We're disconnecting under all normal conditions and most error conditions - >> it looks like only a few conditions would not properly disconnect: >> >> - If pbs_

Re: [galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-20 Thread Nate Coraor
On May 20, 2013, at 3:31 PM, Fields, Christopher J wrote: > On May 20, 2013, at 9:45 AM, Nate Coraor > wrote: > >> On May 19, 2013, at 11:41 PM, Fields, Christopher J wrote: >> >>> I've been seeing this error popping up quite a bit recently (we're using >>> Torque 3.0.5), which is giving a gen

Re: [galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-20 Thread Fields, Christopher J
On May 20, 2013, at 9:45 AM, Nate Coraor wrote: > On May 19, 2013, at 11:41 PM, Fields, Christopher J wrote: > >> I've been seeing this error popping up quite a bit recently (we're using >> Torque 3.0.5), which is giving a general 'cluster failure' Galaxy error on >> jobs: >> >> galaxy.job

Re: [galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-20 Thread Nate Coraor
On May 19, 2013, at 11:41 PM, Fields, Christopher J wrote: > I've been seeing this error popping up quite a bit recently (we're using > Torque 3.0.5), which is giving a general 'cluster failure' Galaxy error on > jobs: > >galaxy.jobs.runners.pbs WARNING 2013-05-19 18:56:44,073 (10588) pbs_s

[galaxy-dev] Irregular failures on cluster (pbs_python?)

2013-05-19 Thread Fields, Christopher J
I've been seeing this error popping up quite a bit recently (we're using Torque 3.0.5), which is giving a general 'cluster failure' Galaxy error on jobs: galaxy.jobs.runners.pbs WARNING 2013-05-19 18:56:44,073 (10588) pbs_submit failed (try 1/5), PBS error 15033: No free connections This ju