[galaxy-dev] Job splitters + SQLIte = OperationalError?

2012-06-14 Thread Peter Cock
Hi all, We are using PostreSQL for our production Galaxy server, but for development I am using SQLite. Typically it is just me is using the development server, so database contention has not generally been a problem. However, while testing job splitting for breaking up tasks for the cluster, I

Re: [galaxy-dev] Job splitters + SQLIte = OperationalError?

2012-06-14 Thread Dannon Baker
On Jun 14, 2012, at 11:37 AM, Peter Cock wrote: My hunch is that all the child-jobs are created and added to the queue and some of this is happening in parallel leading to contention over the SQLite database. Does this sound likely? Yep, this is exactly what's happening. It isn't just the