Did a subtract first to get a known list of rs SNPs that will be found in the
tumor SNPs. That ran without error. Doing a join of the subtracted list of rs
SNPs and the tumor SNPs.
So something different in the join code then in the subtract code.
From: Scooter Willis mailto:hwil...@scripps.edu
Using large amazon instance
Trying to do an interval join of SNPs as output from pileup 120,000
regions(5.5Mb) with with snp135Common 12,000,000(425Mb) and get the following
errors. The goal is to pickup rs id's for known SNPs in the list of SNPs.
Is this a memory issue?
I was able to do the o
