Hello Peter,
In addition to the fixes I've commented on inline below, I've also added a new
rout for specified repository revisions. So the following citable URLs are now
supported in the test tool shed. These fixes and enhancements will not be
available on the main Galaxy tool shed until
On Mon, Feb 11, 2013 at 5:01 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
In addition to the fixes I've commented on inline below, I've also added a
new rout for specified repository revisions. So the following citable URLs
are now supported in the test tool shed. These fixes and
On Mon, Feb 11, 2013 at 5:16 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
However, this is already functional enough to start sharing
direct links. Once this goes live, you'll have to brief the
whoever writes the new tool alerts for Twitter to use it :)
I look forward to seeing the first
On Sat, Feb 2, 2013 at 1:56 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Sat, Feb 2, 2013 at 12:46 AM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
I've added an enhanced version of your implementation for
citable URLS in the tool shed to change set revision
8720:e27d0dd12752.
Hi Peter,
On Feb 8, 2013, at 5:26 AM, Peter Cock wrote:
On Sat, Feb 2, 2013 at 1:56 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
I've noticed one oddity, which is if I go one of the citable URLs like
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
and then browse away to
On Sat, Feb 2, 2013 at 12:46 AM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
I've added an enhanced version of your implementation for
citable URLS in the tool shed to change set revision
8720:e27d0dd12752. This is currently running on the test
tool shed, and viewing repositories
On Tue, Jan 29, 2013 at 4:44 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Tue, Jan 29, 2013 at 4:17 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hi Peter,
The tool shed source is mostly in the following places.
~/lib/galaxy/webapps/community/
/lib/galaxy/tool_shed/
Hi Peter,
Thanks for the update and your contributions. Would you like me to continue
with the work you've started, or would you like to continue yourself? I'll try
to fit this in this week if you want to hand it off to me. Please let me know.
Thanks!
Greg Von Kuster
On Jan 31, 2013, at
On Thursday, January 31, 2013, Greg Von Kuster wrote:
Hi Peter,
Thanks for the update and your contributions. Would you like me to
continue with the work you've started, or would you like to continue
yourself? I'll try to fit this in this week if you want to hand it off to
me. Please let
On Tue, Jan 29, 2013 at 11:44 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
Presumably at this point changing the name in the code would
break too many things?
Actually, changing the package name would probably be a pretty clean
refactoring, just some changes in buildapp. But given how many
Thanks for your request Peter,
I've added a Trello card for this and I'll get to it as soon as possible - the
restriction is simply a bandwidth issue as my plate is maxed out and the code
renaming work just hasn't been a high priority.
Here's the link to the trello card - I believe the plan is
On Mon, Jan 28, 2013 at 7:56 PM, Greg Von Kuster g...@bx.psu.edu wrote:
I've opened a Trello card, but it's in the Galaxy development project, so not
sure if you can see it or not. Here's the link to the card just in case...
On Tue, Jan 29, 2013 at 4:04 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
I was wondering about taking a look at this to see how hard it would
be - but my first query is where is the ToolShed source code?
I think I've found it, in the main repository under the slightly misleading
name of
Hi Peter,
The tool shed source is mostly in the following places.
~/lib/galaxy/webapps/community/
/lib/galaxy/tool_shed/
/lib/galaxy/util/shed_util_common.py
/lib/galaxy/util/shed_util.py
/template/webapps/community/
I'll get to this as soon as I can, but glad you're willing to take a look.
Yes, the tool shed used to be named the Galaxy Community Space.
On Jan 29, 2013, at 11:14 AM, Peter Cock wrote:
On Tue, Jan 29, 2013 at 4:04 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
I was wondering about taking a look at this to see how hard it would
be - but my first query is
On Tue, Jan 29, 2013 at 4:17 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hi Peter,
The tool shed source is mostly in the following places.
~/lib/galaxy/webapps/community/
/lib/galaxy/tool_shed/
/lib/galaxy/util/shed_util_common.py
/lib/galaxy/util/shed_util.py
/template/webapps/community/
Dear all,
Something I am conscious of every time I have directed someone
to a tool or wrapper on the Galaxy Tool Shed is the lack of nice
stable URLs. The current frame based design hinders this - and
as a result I usually just have to give the ToolShed URL and tell
them what to search for. This
Hi Peter,
Thanks for your request, having citable tool shed URLs is definitely important.
I've got this on my list (which is maxed out as usual). I will look into this
in a timely manner and keep you posted appropriately.
Greg Von Kuster
On Jan 28, 2013, at 8:41 AM, Peter Cock wrote:
On Mon, Jan 28, 2013 at 6:49 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hi Peter,
Thanks for your request, having citable tool shed URLs is definitely
important. I've got this on my list (which is maxed out as usual).
I will look into this in a timely manner and keep you posted
I've opened a Trello card, but it's in the Galaxy development project, so not
sure if you can see it or not. Here's the link to the card just in case...
https://trello.com/card/nice-citable-urls-for-galaxy-tool-shed-repositories/506338ce32ae458f6d15e4b3/182
On Jan 28, 2013, at 2:28 PM, Peter
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