Hi,
I found that the ROD file for the 'Unified Genotyper' tool, can be
only vcf format. However for 'Count Covariates' and 'Indel Realigner',
it can be vcf o, gatk_dbsnp or bed. Is this a bug or there is a
limitation on GATK?
Thanks,
Carlos
Hi Carlos,
Thanks for reporting this issue. Most (but not all) of the ROD files for the
GATK now require VCF. I have updated Indel Realigner in changeset
6320:945c7a47755f to reflect this.
Thanks for using Galaxy,
Dan
On Nov 21, 2011, at 4:27 PM, Carlos Borroto wrote:
Hi,
I found that
