Re: [galaxy-dev] RPy testsuite some tests passing - enough for Galaxy?

2012-12-05 Thread James Taylor
Rpy is only used by a handful of tools (should be listed on the tool dependencies page). Everything else in Galaxy should work fine without it. ___ Please keep all replies on the list by using reply all in your mail client. To manage your

Re: [galaxy-dev] RPy testsuite some tests passing - enough for Galaxy?

2012-12-05 Thread Guest, Simon
Rpy is only used by a handful of tools (should be listed on the tool dependencies page). Everything else in Galaxy should work fine without it. Yes, I realise that. It's that handful of tools I'm interested in. I expect they will do their thing just fine with a semi-broken RPy, but I was

Re: [galaxy-dev] RPy testsuite some tests passing - enough for Galaxy?

2012-12-05 Thread dengyongyilong
Hi,I want learn how to use the tool BOWtie 2,Could you tell me where can I find the tutorial? Thanks! best regards to you! dengyongyilong From: James Taylor Date: 2012-12-06 00:02 To: Guest, Simon CC: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] RPy testsuite some tests passing

[galaxy-dev] RPy testsuite some tests passing - enough for Galaxy?

2012-12-04 Thread Guest, Simon
Dear Galaxy devs, We are in the process of deploying Galaxy internally here at AgResearch, and I am currently installing required dependencies. My question relates to RPy. It seems that RPy2 is not yet supported by Galaxy, so we're stuck with RPy 1.0.3a, and this seems to have rusted quite