Re: [galaxy-dev] Script not working in Galaxy

2012-06-24 Thread Ciara Ledero
Thanks for the reply! Weird enough though, the problem went away before I read this message. Still, thanks for the reply. We could use it for future reference. ___ Please keep all replies on the list by using "reply all" in your mail client.

Re: [galaxy-dev] Script not working in Galaxy

2012-06-23 Thread Thon Deboer
Check the Paster.log file...You probably will see an error there when it tries to load your file and it will be a clue how to fix it... Regards, Thon de Boer, Ph.D. Bioinformatics Guru +1-650-799-6839 thondeb...@me.com LinkedIn Profile On Jun 21, 2012, at 5:55 PM, Ciara Ledero wrote: > Hi al

[galaxy-dev] Script not working in Galaxy

2012-06-21 Thread Ciara Ledero
Hi all, I have integrated a script that runs rsem in Galaxy and the following is the .xml that shows it in Galaxy: exec_rrsem.pl $input1 $input2 $input3 $output1 $output2 And here is exec_rrsem.pl, the file that accepts the parameters and sets everything up: $genes