Hi All,
When using the Huttenhower LEfSe on the main, online, Galaxy I got a
Server Error, (Server Error,An error occurred. See the error logs for more
information. (Turn debug on to display exception reports here)) when tried
to Format data for LEfSe. Was able to successfully use it yesterday,
Hi, I have this problem:
I uploaded some data and when I click to display data in browser (the eye) I
get this error:
Server Error:
URL: http://localhost:8080/datasets/d413a19dec13d11e/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
app_iter =
My goal is that no user can upload or create a total of more than 100 gb.
So I tried following the instructions here to set up a quota:
http://wiki.galaxyproject.org/Admin/Disk%20Quotas
I turned on these two things in universe_wsgi.ini:
enable_quotas = True
allow_user_dataset_purge = True
And
Hi Daniel,
In fact, my version needs to be updated :
changeset: 6799:40f1816d6857
tag: tip
user:Greg Von Kuster g...@bx.psu.edu
date:Wed Mar 07 13:35:34 2012 -0500
summary: Fix for populating the tool panel and generating the
integrated_tool_panel.xml file.
I
Hi Sarah,
This looks to be due to a non-unicode character in the dataset's info field.
Are you using a Galaxy revision = 7563:fca4e12478d6?
Thanks for using Galaxy,
Dan
On Dec 11, 2012, at 8:25 AM, Sarah Maman wrote:
Hello,
One of my users gets the following message when he wishes to
Hello,
One of my users gets the following message when he wishes to edit the
attribute of a dataset which is generated by using a tool (same problem
as it is a tool provided by Galaxy or a tool coded by us).
Do you have any idea?
Thanks in advance,
Sarah Maman
URL:
On Aug 3, 2012, at 10:42 AM, David Roquis wrote:
Dear Galaxy community,
I have noticed on forums that some users are experiencing this problem too,
but no clues on how to fix it. When I set debug = false in universe.wsgi.ini,
I get a server error in the history frame (history works
Dear Galaxy community,
I have noticed on forums that some users are experiencing this problem too, but
no clues on how to fix it. When I set debug = false in universe.wsgi.ini, I get
a server error in the history frame (history works perfectly when debug =
true). Trying to create a new
I am still experiencing issues getting my galaxy server to start since the
upgrade. The logs are all getting this type of error:
galaxy@galaxy2:/hpcdata/galaxy-test/galaxy-setup/galaxy-dist cat runner0.log
python path is:
It looks like what happened is that you've updated the instance that was
originally connected to this database from galaxy-central at some point
recently. The current tip of galaxy-central is at database version 103.
The first two options that come to mind are:
1) Hook a fresh galaxy-central
Hi Iry,
Exception: Your database has version '101' but this code expects
version '97'. Please backup your database and then migrate the schema
by running 'sh manage_db.sh -c ./universe_wsgi.runner.ini upgrade'.
Removing PID file runner0.pid
Your galaxy version seems to be older than your
Thanks Dannon and Bjorn for the assistance. I followed Dannon's
suggestion and that fixed my issue.
Thanks,
Iry
On 7/3/12 1:15 PM, Dannon Baker dannonba...@me.com wrote:
It looks like what happened is that you've updated the instance that was
originally connected to this database from
Hi Nate,
I removed to previous instillation just to be safe and performed a new
clone. This time it appears to be less problematic. I am no longer
getting all of the errors. However, I am getting an error due to my
database version. The error is:
galaxy.model.migrate.check DEBUG
On Jun 20, 2012, at 6:46 PM, Iry Witham wrote:
I have recently performed a fresh installation of Galaxy utilizing the latest
distribution and am getting a sizable number of errors when attempting to
start the server. The issue started when I performed a merge so I decided to
do the clean
Hi there,
I received the following error when trying to download/save my tabular
files with 5k lines:
Server Error
An error occurred. See the error logs for more information. (Turn debug on
to display exception reports here)
Please help!
Thanks in advance.
Cheers,
Rathi
--
Rathi
Hi,
I have run into a server error, how can I fix it?
Thanks,
Ashley
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Given the information supplied, I suggest a spatula. Many servers are
quite adept with a spatula.
Your results may vary.
Bob H
On May 9, 2012, at 4:43 PM, Ashley Tehranchi wrote:
Hi,
I have run into a server error, how can I fix it?
Thanks,
Ashley
I'm not sure what that means.
From: Bob Harris rshar...@bx.psu.edu
Date: Wednesday, May 9, 2012 1:49 PM
To: Ashley Tehranchi a...@stanford.edu
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] server error
Given the information supplied, I suggest a spatula. Many servers
not sure what that means.
From: Bob Harris rshar...@bx.psu.edumailto:rshar...@bx.psu.edu
Date: Wednesday, May 9, 2012 1:49 PM
To: Ashley Tehranchi a...@stanford.edumailto:a...@stanford.edu
Cc: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] server error
Hi there,
I received the following error when trying to download/save my tabular
files with 5k lines:
Server Error
An error occurred. See the error logs for more information. (Turn debug on
to display exception reports here)
Please help!
Thanks in advance.
Cheers,
Rathi
--
Rathi D.
Hello,
I have the version 6528:63bc46cc73b7 of galaxy running locally on our server
installed from https://bitbucket.org/galaxy/galaxy-dist/.
I've tried to bring tabular2html tool from Galaxy main tool shed repository
following the wiki information
On Oct 27, 2011, at 8:23 AM, SHAUN WEBB wrote:
Hi, I updated my test server today and everything seemed fine. I added a new
library item via a URL. After that my history panel displays Internal Server
Error and I am getting the error below in paster.log:
Any ideas how this has occurred
Hi, I updated my test server today and everything seemed fine. I added
a new library item via a URL. After that my history panel displays
Internal Server Error and I am getting the error below in paster.log:
Any ideas how this has occurred and if there is a fix?
Shaun
David,
I looked into this for some time, and although I found strange behavior in the
mercurial environment, it is impossible to determine what caused it. Your
repository was definitely corrupted in some way, perhaps by a network problem
that occurred when you were transferring files, or some
Just realized I didn't reply to all, so the list didn't see this.
No problem at all, it would be much appreciated in fact.
Is there anything I need to do to do so you can do that?
Cheers
David
On Wed, Oct 26, 2011 at 9:28 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello David,
I'm not sure
Hello David,
I'm not sure why you're seeing this - do you mind if I try to delete all of the
files in your repository whose name ends in '~'? That may help me track down
the problem.
Greg Von Kuster
On Oct 26, 2011, at 3:09 PM, David Murphy wrote:
Hi
I've been trying to create a
Hello Alex,
This issue was the result of a configuration error that should now be
corrected. Please let us know if you encounter further issues.
thanks for reporting this,
Greg Von Kuster
On Sep 9, 2011, at 12:41 PM, Alex R Bigelow wrote:
Hi,
I am a new developer interested in writing
Hi Isabelle,
thank you for your help. However filter-with=gzip is disabled in our
configuration. I set everything according to the guide on
https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer. The
gzip option you see in my log is from the Apache server.
Sarah
On
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