>> To: Chorny, Ilya; galaxy-dev@lists.bx.psu.edu
>> Subject: Re: [galaxy-dev] Tools requiring java can't find java
>>
>> Yes, your java path is not set, because you are using an non-login shell.
>> Indeed, you should be talking to your sysadmins.
>>
>> ---
]
> Sent: Tuesday, August 30, 2011 9:40 AM
> To: Chorny, Ilya; galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Tools requiring java can't find java
>
> Yes, your java path is not set, because you are using an non-login shell.
> Indeed, you should be talking to your
How do I set my path in a non login shell?
From: George Marselis [mailto:george.marse...@kaust.edu.sa]
Sent: Tuesday, August 30, 2011 9:40 AM
To: Chorny, Ilya; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Tools requiring java can't find java
Yes, your java path is not set, becaus
, Skype: project2501a
From: "Chorny, Ilya" mailto:icho...@illumina.com>>
Date: Tue, 30 Aug 2011 19:23:42 +0300
To: "galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>"
mailto:galaxy-dev@lists.bx.psu.edu>>
Subject: [galaxy-dev] Tools requiring ja
This is probably a question for our sys admin but when I run tools such as
GATK I get an error java command not found. I can execute java from the command
line and it works. Further I can grab the drmaa submission script (ie
galaxy_job_id.sh) and qsub it from the command line and it finds JAVA.
