Thanks for the reply! I'll try that one. I'll come back if the problem
still persists.
Cheers,
CL
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On Apr 29, 2012, at 9:19 PM, Ciara Ledero wrote:
> This is my code for running a samtools command internally, via Galaxy:
>
>
> open INP,"< $ARGV[0]"
>or die "Cannot open file: $!";
>
> $file = "$ARGV[1]";
>
> open OUT, "> $file"
>or die "Cannot open file: $!";
>
> @out = `/ho
On Apr 29, 2012, at 9:19 PM, Ciara Ledero wrote:
> This is my code for running a samtools command internally, via Galaxy:
>
>
> open INP,"< $ARGV[0]"
> or die "Cannot open file: $!";
>
> $file = "$ARGV[1]";
>
> open OUT, "> $file"
> or die "Cannot open file: $!";
>
> @out = `/
This is my code for running a samtools command internally, via Galaxy:
open INP,"< $ARGV[0]"
or die "Cannot open file: $!";
$file = "$ARGV[1]";
open OUT, "> $file"
or die "Cannot open file: $!";
@out = `/home/applications/samtools-0.1.7a/samtools view -bS $ARGV[0] 2>&1`;
print
