Re: [galaxy-dev] Updating help text for a tool shed repository

2012-12-17 Thread Lance Parsons
Thanks for looking into this Greg. The environment where I'm having this problem is our testing and production systems. Both environments are CentOS release 5.8 (Final) with Mercurial version 2.4.1. Interestingly, when I tried the same thing with a development setup on my OSX box (10.6.8) w

Re: [galaxy-dev] Updating help text for a tool shed repository

2012-12-13 Thread Greg Von Kuster
Hi Lance, I tried several scenarios today in an attempt to reproduce this but I was not able to. Have you tried uninstalling the repository (check the checkbox to completely uninstall it) and then reinstall it? I'm trying to reproduce this on a mac running mercurial version 2.2.3 and Python 2

Re: [galaxy-dev] Updating help text for a tool shed repository

2012-12-13 Thread Lance Parsons
Since I've had issues with workflow and the toolshed in the past, I have changed my workflow so that my only interaction with the toolshed is either via uploading a tarball via the web interface or installing a tool into my local Galaxy via the web interface (or occasionally just downloading ta

Re: [galaxy-dev] Updating help text for a tool shed repository

2012-12-13 Thread Greg Von Kuster
Hi Lance, What process did you use for updating the tool shed repository and how many separate repositories did you use? You should not be updating a local repository, pushing the changes to the tool shed repository, and then attempting to pull the changes back to the same repository. Your re

[galaxy-dev] Updating help text for a tool shed repository

2012-12-10 Thread Lance Parsons
I recently updated the htseq-count tool in the Galaxy toolshed to version 0.3. This version has some functional changes and thus the tool version was incremented. I installed this new version of the tool in my local Galaxy instance. However, I realized later that I missed updating one part o