Re: [galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-29 Thread Björn Grüning
Hi Ira, as far as I can see you missed the actions tag. That results in no log message at all, since no action type is executed. Galaxy should probably give an error here. Or better validate that during tool upload. I will fill a Trello Card for it. The following code snipped worked for me:

Re: [galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-29 Thread Ira Cooke
Ahhh ... Thanks .. I can't believe I missed that. Thanks for spotting it. I'm not sure I understand enough about how this works to answer your ruby_home question. Ill play with this more tomorrow and see how things work with my tools and maybe have more feedback then Cheers Ira On 29 Oct

Re: [galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-29 Thread Bjoern Gruening
Ahhh ... Thanks .. I can't believe I missed that. Thanks for spotting it. No problem! I'm not sure I understand enough about how this works to answer your ruby_home question. Ill play with this more tomorrow and see how things work with my tools and maybe have more feedback then Sure,

[galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-28 Thread Ira Cooke
Hi All, The short version of my problem is that I often seem to find myself in a situation where my tool gets stuck in the Installing phase ... and I don't know how to get feedback on it to see where it is failing. What I guess I'm after is just the stdout of the tool installation .. but

Re: [galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-28 Thread Björn Grüning
Hi Ira, I can reproduce that error here, will try to study it tomorrow more deeply. For the meantime can you try to remove the following lines? action type=set_environment_for_install repository name=package_ruby_2_0 owner=bgruening package name=ruby

Re: [galaxy-dev] What to do with toolshed tools that get stuck Installing

2013-10-28 Thread Ira Cooke
Hi Bjoern, Thanks ... I thought I had to do that in order to make the GALAXY_RUBY_HOME variable available ... nice that it's not necessary. I've updated the tool on the test toolshed and have rerun my test but unfortunately the problem is still there. Cheers Ira On 29/10/2013, at 10:06 AM,