Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2012-06-21 Thread Richard Park
Hi Dannon, Is there a guide or format you need for submitting pull requests? I'd like to contribute my API enhancements specifically for importing, creating, deleting workflows. I also had a delete library api call, but I think that was also added to the galaxy code recently. thanks, Richard On

Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2012-06-21 Thread Dannon Baker
Hi Richard, that'd be great! The easiest thing for us is a bitbucket pull request on a clean fork (with your changes applied) of galaxy-central. -Dannon On Jun 21, 2012, at 4:54 PM, Richard Park wrote: Hi Dannon, Is there a guide or format you need for submitting pull requests? I'd like to

Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2012-04-10 Thread Dannon Baker
Richard, For specifying or changing species, you may want to inspect the input via the API (api/histories/id/contents/id/) and snag the genome_build attribute that way. Or am I missing the issue you're running into? As an aside, I'd love to look at the runtime parameter specification changes

Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2011-12-07 Thread Richard Park
Hi Dannon, Thanks for the pointers. I am new to developing to galaxy and any help or guidance would be much appreciated. Are there any docs to help me understand how to code/debug galaxy? And if you have any suggestions for the general process of extending the API i would be very grateful. thanks,

[galaxy-dev] Workflow API (runtime modification of tool parameters)

2011-12-05 Thread Richard Park
Hello, I was wondering what would be the best way to extend Galaxy's API functionality to allow for runtime modification of tool parameters? I have successfully been able to run workflows programmatically using the API, following the basic steps in: scripts/api/execute_workflow.py.

Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2011-12-05 Thread Dannon Baker
Richard, You're correct in that currently the workflow API affords no method for runtime modification of tool parameters, other than inputs. Depending on your needs, it might be feasible to have a few static workflows that you reuse often via the workflow API. If that isn't the case, and you