[galaxy-dev] accessing files_path directory in subsequent analysis steps

2011-09-01 Thread Nikhil Joshi
Hi all, So I am writing XML files for an analysis pipeline. The first step in the pipeline is to index the reference, the resulting files of which I have put into the files_path directory that I get from using $output.files_path. But then I want to be able to get access to that path in a

Re: [galaxy-dev] accessing files_path directory in subsequent analysis steps

2011-09-01 Thread Ross
Nikhil, You've found an old wart - try using extra_files_path I don't remember exactly why but it's write to files_path but read from extra_files_path :0 On Fri, Sep 2, 2011 at 9:21 AM, Nikhil Joshi najo...@ucdavis.edu wrote: Hi all, So I am writing XML files for an analysis pipeline.  The