Re: [galaxy-dev] cluster files directory configuration
On May 25, 2011, at 8:18 AM, Nate Coraor wrote: Shantanu Pavgi wrote: On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote: I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here? Any help on what might be wrong here? Is this option getting overridden by some other config? SGE or DRMAA? I think this was broken in the dist version of Galaxy prior to the one just released on Friday - try the latest and let us know if there's still an issue. Well, we are using SGE with drmaa interface (job runner configured with drmaa url). I will check out the latest version sometime soon. Thanks for the update. -- Shantanu. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] cluster files directory configuration
Shantanu Pavgi wrote: On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote: I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here? Any help on what might be wrong here? Is this option getting overridden by some other config? SGE or DRMAA? I think this was broken in the dist version of Galaxy prior to the one just released on Friday - try the latest and let us know if there's still an issue. --nate -- Thanks, Shantanu. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] cluster files directory configuration
On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote: I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here? Any help on what might be wrong here? Is this option getting overridden by some other config? -- Thanks, Shantanu. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
